1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaatttctcatattgacattgttgagatcctacatcaactcagataggggccatatggccagtgcagttcttataaggcttgggcaatcttcac...
species | Glycine max |
transcript | GLYMA01G43700.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG GGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTGEST: gi|208085774|gb|GD882406.1|GD882406
genomic: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTG
EST: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG GGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTGEST: gi|7042736|gb|AW472630.1|AW472630
genomic: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTG
EST: TTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTAGTGATT-CCATCTTG GGGCAAGGATGTTEST: gi|15202990|gb|BI425758.1|BI425758
genomic: TTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTA-TGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTT
EST: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG GGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTGEST: gi|9819986|gb|BE555499.1|BE555499
genomic: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTG
EST: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG GGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTGEST: gi|6915919|gb|AW397449.1|AW397449
genomic: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTG
EST: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG GGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTGEST: gi|208326619|gb|GE124921.1|GE124921
genomic: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTG
EST: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG GGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTGEST: gi|7146570|gb|AW508492.1|AW508492
genomic: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTG
EST: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTG GGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAACAATTG
genomic: TTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaat ... ttttatgcagGGGCAAGGATGTTGTATAATCCACATGATATCTTATTGAGAAGAAAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTTGgtaatcaaatttctcatattgacattgttgagatcctacatcaactcagataggggccatatggccagtgcagttcttataaggcttgggcaatcttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC