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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGAAAAGATTATGTTCATCAACTGAGGCTTATAACAGAGgtatgggtttggtacttccatttgaaattatgggctgcggaagcattctaagtaatgcattggatgacctatctctcgcattagtttattggttgttctg...

Basic information

species Glycine max
transcript GLYMA01G43100.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g06060.1 (Oryza sativa), 5'ss of exon 4
TGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGAAAAGATTATGTTCATCAACTGAGGCTTATAACAGAGgtatgggtttggtacttc-catttgaaattatgggctgcggaagcattctaagtaatgcattggatgacctatctctcgcattagtttattggttgttctg------
|||| | ||||| || || |||||  ||||||| ||  | || || || || |||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||   |   || |||  | || ||  ||  | || |      ||    ||| |  |||  | | |      | | |  ||  ||| || ||| || ||      
TGATATCTGGTCGGTAGGCTGCATCCTTGGTGAGATCGTTACAAGGGAGCCTTTGTTTCCTGGAAAGGATTATGTCCATCAGCTGAGGCTAATAACTGAGgtatga--tcactaattcataattcaagatactgtcttctttgctatc---agtcaatcatctgttcatgggaatgttgtttt--tttgtttgttcttttgttagca

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 5'ss of exon 4
TGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGAAAAGATTATGTTCATCAACTGAGGCTTATAACAGAGgtatgg---gtttggtacttccatttgaaa---ttatgggctgcggaagcat----tctaagtaatgcattggatgacctatctctcgcattagtttattggttgttctg
|||||| ||||| ||||| |||||| ||||||||||| ||||  |  ||||| ||||||||||||  |||||  |||| ||||| |   | || || |||||| ||   || |||| | |   ||  | |   |||  | ||||  || | |    | | | |  | | ||| || |   ||   |  | | |  |              
TGATGTCTGGTCAGTTGGATGCATACTTGGTGAAATTGTGACTCGTCAACCCCTGTTTCCTGGAAGGGATTACATTCAGCAACTAAAATTGATCACTGAGgtaaggcttgtctggttcattgcttgcatacttttaatgtctgcataaacgtaattttttatttgtac-ttgaataagagatacattacttgaactctgaa---------

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 4
TGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGAAAAGATTATGTTCATCAACTGAGGCTTATAACAGAGgtatgggtttggtacttccatttgaaat-tatgggctgcggaagcattctaagtaatgcattggatgacctatctctcgcattagtttat-tggttgttctg
|||||| |||||||||||||||||||||| ||| |||||||| || |||||  | || || || || ||||| |||||||| || |  ||||| || ||||||||  | |  |  ||      ||  | ||        |||| |  | | | |  ||  |||    |  | | | | |  ||  || || ||||||    |
TGATGTATGGTCTGTTGGTTGCATATTTGCTGAGATTATGACAAGGGAACCGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATCACTGAGgtatga-tgttctgttttagaaagatctgtacaaatgttggaaac--ttttatttgtgtgttg--caatgtgtttat-gagttgtttcatgtggttgagtag

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 4
TGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGAAAAGATTATGTTCATCAACTGAGGCTTATAACAGAGgtatgggt-ttggtacttcc--atttgaaattatgggctgcggaagcattctaagtaat-gcattggatgacctatctctcgca-ttagtttat-tggtt--gttctg---------------------------
|||| | |||||||||||||||||| | |||||||| |||||||||||||| || || ||||| ||||||||||||||||| ||||||||||| |||||||||||| | ||||| |||    | |     |||      || | ||||||||   |    |  ||  ||||   |||   |  | | ||   || ||| |  |  ||                            
TGATATATGGTCTGTTGGTTGCATACTAGGTGAAATCATGACCAGAGAACCATTATTCCCTGGCAAAGATTATGTTCATCAGCTGAGGCTTATCACAGAGgtatggttcttggtgcttttggagtgatgtttacttttggctgcagcattcttgtttccagttttccatgataaatcctacaaaatcagccaatctggctcagaactaccacaatttttttctttggtgtgacag