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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACCGTGTGTATCATATCTGCTCCGCAAACGAGCTCTTTACGATGATATGTCAAGgtaataactgattctgtacaagttctcccagatttcaaaaatgaattatatggtttaaattaatgtgtgataacttatatggttatcttttgtttactccag

Basic information

species Glycine max
transcript GLYMA01G43010.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43010.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g00130.t01 (Vitis vinifera), 5'ss of exon 3
TGCACCGTGTGTATCATATCTGCTCCGCAAACGAGCTCTTTACGATGATATGTCAAGgtaataactgattctgtacaagttctcccagatttcaaaaatgaattatatggtttaaattaatgtgtgataacttatatggttatcttttgtttactccag
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TGCACCATGTGTGTCATACTTGCTTCGCAAAAGAGCTCTTTATAATGATATGTCAAGgtaataggtgctct----ccatttcccttggaagtct--------tgatgtcaactgaattgatgt-cggtg-taaatattgtttcctcatgtctgcatag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295809|gb|FG992620.1|FG992620
EST:     TGTGTATCATATCTGCTCCGCAAACGAGCTCTTTACGATGATATGTCAAG                         ATACACATGTTGTGCTGGTTACATGCCCTGCAGTGGTCGGTGTGGAGAAAG
genomic: TGTGTATCATATCTGCTCCGCAAACGAGCTCTTTACGATGATATGTCAAGgtaataactg ... tttactccagATACACATGTTGTGCTGGTTACATGCCCTGCAGTGGTCGGTGTGGAGAAAG