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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGAGGAGCTGTTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTTATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtacgtggatactgctctgtgacaaggatacaatatattgtagatgctttataattgttcaaacatgtgattaagaagtcttctgaagcatgtaaatgtttttttaag

Basic information

species Glycine max
transcript GLYMA01G42140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G42140.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
ATTAGAGGAGCTGTTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTTATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtacgtggatactgctctgtgacaag-gat--acaatatattgtagatgctttataattgttcaaacatgtgattaagaagtcttctgaagcatgtaaatgtttttttaag
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TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagatttctaattgttgattcacattgtatta-agatatttctgaagcataagtgtgttcgaatttcag-------------------------------