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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCATGGGTCCAATGTTCAAGGGCTAGAAACAACTGCAACATTTGATCCCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAAgtgagttaaatgggtgattattcctgtgagcctttattggtcttttactatttttaaccgtttaagattctacatcttacaatgttacctggtgctttaacaagtacattaagagaaaacactgtttttactttttatgaagtgtattttggatttatatcatgcttctgacattgatttaaacag

Basic information

species Glycine max
transcript GLYMA01G41600.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41600.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G16760.2 (Arabidopsis thaliana), 5'ss of exon 4
TGGTCATGGGTCCAATGTTCAAGGGCTAGAAACAACTGCAACATTTGATCCCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAAgtgagttaaatgggtgattattcctgtgagcctttattggtcttttactatttttaaccgtttaagattctacatcttacaatgttacctggtgctttaacaagtacattaagagaaaacactgtttttactttttatgaagtgtattttggatttatatcatgcttctgacattgatttaaacag
||||||||| || ||||||||||| || || |||||||| |||||||||||||| || || || ||||| || || |  || ||   |||| |   |||||| |||  |    |      ||  | ||||  ||      |       |  | ||    || ||||||| | |||||      ||  | || |  ||| |  ||                                                                                  
TGGTCATGGCTCAAATGTTCAAGGACTTGAGACAACTGCCACATTTGATCCCAAGACTGATGAGTTTGTAATTCACACTCCAACTCAGACTGCATCCAAAgtaagtataccaagaagcctttgat-tgagtatt-----atgcacagtttctcttggttgtgtaagatttt-catct------gt--cttgattgtttgaatag----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699794|gb|BW652487.1|BW652487
EST:     CCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAA                         TGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCC
genomic: CCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAAgtgagttaaa ... atttaaacagTGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCC
EST: gi|7478633|gb|AW666342.1|AW666342
EST:     CCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAA                         TGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCC
genomic: CCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAAgtgagttaaa ... atttaaacagTGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCC