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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAACGTATGTGCTTCTGCCAATGCCTTTGCTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgttatgcttgagtctaaattaaaaagtaagatcattcaacttgttaaattagtttgatattcattcaagttagatttgaattttatttgaaaagaaactcaagacgggggggattaatctttcaacattttgttttgtggtcttgtaaatgatggagcag

Basic information

species Glycine max
transcript GLYMA01G40930.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40930.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0012g00600.t01 (Vitis vinifera), 5'ss of exon 4
TGTTAACGTATGTGCTTCTGCCAATGCCTTTGCTGTTCTTTGCGGGGTCTGATGATTCTA---TATTTTCTGAATCTGATAATAGgtaaattgttat--gcttgagtctaaattaaaaagtaagatcattcaacttgttaaatt----agtttgatattcattcaagttagatttga-attttatttgaaaagaaactcaagacgggggggattaatctttcaacattttgttttgtggtcttgtaaatgatggagcag
|  ||| |||||| ||||| || |||||||||||||||||||| ||||||||   ||||    | |||||||||||||  ||||||| |    || |   ||| |   | |||| |  | |||     | |   |   | ||||    |  |||| |||   |||  |||  ||||   ||  |||||||         |   | |                                                     
TAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAGgttagccattttctacttaaaatttaatttacgattaatgctttacctttctcttaatttaaaaacttga-atttgctcattttaattttgttgttgcatttgaacctccgtgtataccag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412213|gb|EV282025.1|EV282025
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
EST: gi|193585531|gb|FK538481.1|FK538481
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
EST: gi|151402601|gb|EV272414.1|EV272414
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
EST: gi|213591806|gb|DB977276.1|DB977276
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
EST: gi|192300500|gb|FG988857.1|FG988857
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT