1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCTCGAAGAAATGAGGTTTCTAATGCTAACCCTACAAATCAAGCTGCAAAGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgttttcccgtcgaaagaattatcaaatgaataatggaagtatattgctcttacagttgaagttgatgcag
species | Glycine max |
transcript | GLYMA01G39720.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCGGGAACCCTGCCTATGAAGAAAAG ATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTCEST: gi|193430384|gb|FK393302.1|FK393302
genomic: GCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgt ... gttgatgcagATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTC
EST: GCCGGGAACCCTGCCTATGAAGAAAAG ATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTCEST: gi|151393328|gb|EV263203.1|EV263203
genomic: GCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgt ... gttgatgcagATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTC
EST: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAG ATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAAGAACGGGATTTCEST: gi|192296791|gb|FG993089.1|FG993089
genomic: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgt ... gttgatgcagATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTC
EST: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAG ATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTCEST: gi|7685270|gb|AW755918.1|AW755918
genomic: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgt ... gttgatgcagATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTC
EST: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAG ATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTCEST: gi|192301066|gb|FG987991.1|FG987991
genomic: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgt ... gttgatgcagATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTC
EST: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAG ATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAAGGAACGGGATTTEST: gi|22929992|gb|BU547131.1|BU547131
genomic: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgt ... gttgatgcagATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAA-GGAACGGGATTT
EST: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAG ATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTC
genomic: AGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgt ... gttgatgcagATAACAGAGTTGAAGTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTCGAAGAAATGAGGTTTCTAATGCTAACCCTACAAATCAAGCTGCAAAGGTTGCGAGAGCAGCACCTTCTGCCGGAAACCCTGCCTATGAAGAAAAGgtatttttgttttcccgtcgaaagaattatcaaatgaataatggaagtatattgctcttacagttgaagttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA