Sequence
atgc intronic sequence ATGC exonic sequenceTGCGTATGATAGAGCTGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGgtgagtcatcaagagagagggagggagaatctgtggaaaggcatttatcttatctcgaacagtcgcgtgataccttatcttctacagtttcttaatcactagctattagtattttatcaatcttgaattggtatgatttggctaattaatgttgtgttaatatag
Basic information
species | Glycine max |
transcript | GLYMA01G39520.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G39520.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G36920.1 (Arabidopsis thaliana), 5'ss of exon 4
TGCGTATGATAGAGCTGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGgtgagtcatcaagagagagggagggagaatctgtggaaaggcatttatcttatctcgaacagtcgcgtgataccttatcttctacagtttcttaatcactagctattagtattttatcaatcttgaattggtatgatttggctaattaatgttgtgttaatatag
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AGCATATGATAGAGCTGCTATTAAATTCCGTGGAGTAGAAGCGGATATCAATTTCAACATCGACGATTATGATGATGACTTGAAACAGgtaaat-ataaattataaactatattggtttttattaacgatttttaaag-gtttgggagattaatattgaaattgaattt-tatag------------------------------------------------------------------------------
upper sequence: GLYMA01G39520.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g00220.t01 (Vitis vinifera), 5'ss of exon 4
TGCGTATGATAGAGCTGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGgtgagtcatcaagagagagggagggagaatctgtggaaaggcatttatcttatctcgaacagtcgcgtgataccttatctt--ctacagtttcttaatcactagctattagtattttatcaatcttgaattggtatgatttggctaattaatgttgtgtt-aatatag--
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CGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAGgt---------agagag-gggcttcaccttatcttgtacagt-tccaccttatcttctacagtattttgattcgcttttctgattgttgctagttgagaaatagcaaa-aatgaagaaaaaaaagaaagtggattgtttttcatgtatacatgtaatgttgaatgcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7684786|gb|AW755434.1|AW755434EST: AAGACTATGAGGAAGACTTGAAGCAG ATGACCAATTTAACTAAGGAGGAGTTTGTGCATGTACTTCGCCGACAAAGC
genomic: AAGACTATGAGGAAGACTTGAAGCAGgtgagtcatc ... gttaatatagATGACCAATTTAACTAAGGAGGAGTTTGTGCATGTTCTTCGCCGACAAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCGTATGATAGAGCTGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGgtgagtcatcaagagagagggagggagaatctgtggaaaggcatttatcttatctcgaacagtcgcgtgataccttatcttctacagtttcttaatcactagctattagtattttatcaatcttgaattggtatgatttggctaattaatgttgtgttaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC