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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGgtaaacacttccaagctctgcttcactttctcttctcatcttattattaccttccttttaaatttcatcgattccttcagtttccaatttattagtttattgttccgttgggaaagatgcttttccgggttgtaactgttgtttgcttttcaacag

Basic information

species Glycine max
transcript GLYMA01G39420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G050861_T01 (Zea mays), 5'ss of exon 3
ACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGgtaaacacttccaagctctgcttcactttctcttctcatcttattattaccttccttttaaatttcatcgattccttcagtttccaatttattagtttattgttccgttgggaaagatgcttttccgggttgtaactgttgtttgcttttcaacag
| ||||| || || ||||| ||||| |||||||||||||| |||   || ||||| || ||||| ||  ||||||| |||||||||||||| || ||||||||  |||||    |   |  | |   |  |||| |  | ||  | | ||  ||   |||     |||   ||     | ||   ||                                                                     
ATAATGGAAACTTGGAGCAATGGCTCCATGGGGATGTTGGCCCTGTGAGCCCTCTTACATGGGATATCAGAATGAAGATTATTCTGGGAACAGCAAAAGGgtatgcactttgctgacttattac-tgtagtcttgtttttttgctgtcactatctgctta-----cattattttacctaattgtgaag--------------------------------------------------------------------

upper sequence: GLYMA01G39420.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g00480.t01 (Vitis vinifera), 5'ss of exon 3
ACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGgtaaacacttccaagctctgcttcactttctcttctcatcttattattaccttccttttaaatttcatcgattccttcagtttccaatttattagtttattgttccgttgggaaagatgcttttccgggttgtaactgttgtttgcttttcaacag
| ||||| ||||| ||||||||||| ||||| ||||| |||||| | |||||||| |||||||| ||||||||||| || || |||||||| || |||||||  | | ||| ||       |  | ||   || |  |     |||   | |  || ||   || |   |  |   ||||     || | |  | |  |                                                         
ATAATGGGAATTTGGAGCAGTGGCTTCATGGTGATGTAGGGCCTCGAAGTCCTCTTACTTGGGAGATTCGAATGAATATAATCCTGGGAACTGCAAAAGGgt--ataattcaaa-------tcaaattgggctacctaagccgttaccccttatctgttgtgttgctctg--ttgatcagaactgaactgaa-aatgcag--------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323263|gb|FK015269.1|FK015269
EST:     CCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGG                         GTTAACTTATCTTCATGAGGGGTTGGAACCAAAAGTTGTTCACCGTGATAT
genomic: CCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGgtaaacactt ... ttttcaacagGTTAACTTATCTTCATGAGGGGTTGGAACCAAAAGTTGTTCACCGTGATAT