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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatatgaatttttcacttaccgtgttttgttgtctaatcttatgggatattctgtttgttagtgttatgtccatttttttttgtttgtttatatt...

Basic information

species Glycine max
transcript GLYMA01G37480.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697785|gb|BW663924.1|BW663924
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|31469425|gb|CD411453.1|CD411453
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGTCATATTTGTTCAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|15664810|gb|BI702173.1|BI702173
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|10844680|gb|BF067906.1|BF067906
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATTGGGCCCCCTGCAATGACAGTTAGTTCTATCTG
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCA-T-GGTCCCCTGCGATGACAGTTAGTTCTATCTG
EST: gi|9204241|gb|BE330465.1|BE330465
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG                         ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|20813348|gb|BQ297826.1|BQ297826
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|37994961|gb|CF806550.1|CF806550
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|209703743|gb|BW656876.1|BW656876
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|20813177|gb|BQ297655.1|BQ297655
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|209697863|gb|BW663925.1|BW663925
EST:     TATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|27445947|gb|CA953070.1|CA953070
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
EST: gi|37996938|gb|CF808527.1|CF808527
EST:     TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG                         ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAGgtatgtatat ... catcatgcagATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCA