Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttattgctgcataatgtgatactgatattgagtaccatgcattcattagatactgccttctggcttgtttatttaatttattcattgtggcttg...

Basic information

species Glycine max
transcript GLYMA01G36880.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36880.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 4
TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttattgctgcataatgtgatactgatattgagtaccatgcattcattagatactgccttctggcttgtttatttaatttattcattgtggcttg--
||||| || ||| ||||||||||||| |||||||| || || || || || || |||||||||||||||     |||       | |  |   || ||  | |    || |    | | |   |   || ||  || |  ||  || |  |    || |  ||   
TGGATACCTGAGCTGAAGCATTATGCACCTGGTGTGCCTATCATCCTTGTGGGAACAAAGCTTGgtaagaaccgtgcaaggctctattttga-gaaatctaatcttttgtacctgtcacaagttcggttttgattt-tggatggaagtagtggcatgggattttta

upper sequence: GLYMA01G36880.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G846811_T01 (Zea mays), 5'ss of exon 4
TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttattgctgcataatgtgatactgatattgagtaccatgcattcattagatactgccttctggcttgt--ttatttaatttattc-attgtggcttg
||||| || ||  ||||||||||||| |||||||| || |||||||| || || |||||||||||||||   | || | |      |  |  ||| ||  |       |   |    | ||      | || | || |  |   | |||| |||  | | | | || 
TGGATACCTGAACTGAAGCATTATGCACCTGGTGTGCCAATTATTCTCGTAGGGACAAAGCTTGgtaag---aatgattcggtccttctttttgaaatccaaccttcggtgcttgcaaaattgattatgctagtttctgatagatcaattgattggactttcggtta

upper sequence: GLYMA01G36880.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G803949_T02 (Zea mays), 5'ss of exon 4
TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttattgctgcataatgtgatactgatattgagtaccatgcattcattagatactgccttctggctt---gtttatttaatttattcattgtggcttg
||||| || ||  ||||||||||||| |||||||| || || ||||| || || |||||||||||||||  |||   |   |  | |  |   || ||  ||     ||   |  | || | |    | || | ||    |  ||  |||  | | |||   | || 
TGGATACCTGAACTGAAGCATTATGCACCTGGTGTGCCAATAATTCTCGTAGGGACAAAGCTTGgtaag--tatgattatgtcctttttt-tggaaatccagccttctgtgcttgtaagcttcacgatgctagttttcgatagatacaatacaattattagagtttt

upper sequence: GLYMA01G36880.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttattgctgcataatgtgatactgatattgagtac---catgcattcattagatactgccttctggcttgtttatttaatttattcattgtggcttg
|||||||| ||||||||||| ||||||||||||||||| ||| | || ||||| || || || ||| |  |  |     || | | ||    || |  ||  |      ||  ||   |  ||| |  | | ||  |      ||||   || |||| | |     |
TGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTGTTGGAACCAAACTAGgttacttcctcctctcaca-tttgtccttgtttatgcatttatttatatatatgtctgattcc-catgcttacactgccattttcctt-ttcactttattaag

upper sequence: GLYMA01G36880.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 5
TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttattgctgcataatgtgatactgatattgagtaccatgcattcattagatactgccttctg--gcttgtttatttaatttattcattgtggcttg-
|||||||| || |||||||||||||| |||||||| || ||  |||| |||||||| ||||||||| || ||     |      | || | |   |  |   |||  |  | ||  ||| | ||   ||||   | |  |  |  |  |||        || |    
TGGATTCCAGAATTGAAGCATTATGCACCTGGTGTTCCGATAGTTCTTGTTGGCACTAAGCTTGgttagatttcctttcagctttatggttcctcttct---tactgtagactccatagctgctcttttcttatgttcatgaagatggtttcagatccatgtccaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6746963|gb|AW317419.1|AW317419
EST:     TGGTTGGCAC-TATCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: TGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|9819855|gb|BE555431.1|BE555431
EST:     CTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: CTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|31455813|gb|CD397841.1|CD397841
EST:     GAAGCATGATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|31306633|gb|CD391836.1|CD391836
EST:     GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACCAAGCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|26268044|gb|CA819107.1|CA819107
EST:     GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|31469737|gb|CD411765.1|CD411765
EST:     GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|17519189|gb|BM188231.1|BM188231
EST:     GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|14991554|gb|BI317227.1|BI317227
EST:     GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|31309981|gb|CD395184.1|CD395184
EST:     GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACCAAGCTTG                         ACNTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
EST: gi|31458682|gb|CD400710.1|CD400710
EST:     GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG                         ACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA
genomic: GAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttat ... gatgagatagACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTACCTA