1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtggcaatttattgtggtcatagtgttttgggtgtatttcttcttatttattttgataattataaggtttctgtatggcctgtaatgaaggatgtatggatcatgttatatgttaagaaaataattcatttataaaaaaagtcgatgataaattgcatgtgtggtttcattttcag
species | Glycine max |
transcript | GLYMA01G36880.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|26057126|gb|CA800040.1|CA800040
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|298166464|gb|HO009903.1|HO009903
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCGTTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|31455813|gb|CD397841.1|CD397841
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: ATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATGATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|19452394|gb|BM953804.1|BM953804
genomic: ATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|5175630|gb|AI759963.1|AI759963
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCGCATTATTCTGGTTEST: gi|10843808|gb|BF067063.1|BF067063
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGACAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCGCTG-TGTCCCCATTATTCTGGTEST: gi|31306633|gb|CD391836.1|CD391836
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTC-CTGGTGTCCCCATTATTCTGGT
EST: ATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|17964056|gb|BM270797.1|BM270797
genomic: ATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|7925509|gb|AW831535.1|AW831535
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|5688224|gb|AI941239.1|AI941239
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCNCATTATTCTGGTTEST: gi|31469737|gb|CD411765.1|CD411765
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTCAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|37995833|gb|CF807422.1|CF807422
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|17519189|gb|BM188231.1|BM188231
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|14991554|gb|BI317227.1|BI317227
genomic: TTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: GAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|31309981|gb|CD395184.1|CD395184
genomic: GAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|7684704|gb|AW755352.1|AW755352
genomic: TCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTACTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAT-G TGGTATTCCAGAGTTGAAGCATTATGCTEST: gi|31458682|gb|CD400710.1|CD400710
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGG-ATTCCGGAGTTGAAGCATTATGCT
EST: CAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTEST: gi|17964054|gb|BM270795.1|BM270795
genomic: CAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
EST: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAG TGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
genomic: TGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtg ... tcattttcagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGgtacttcgtggcaatttattgtggtcatagtgttttgggtgtatttcttcttatttattttgataattataaggtttctgtatggcctgtaatgaaggatgtatggatcatgttatatgttaagaaaataattcatttataaaaaaagtcgatgataaattgcatgtgtggtttcattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG