Sequence
atgc intronic sequence ATGC exonic sequenceGTCGAGGCATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGgtgagtaagcaagattttttgccctctgctcctttcataggcaggattattcctctttgaggtttcttagttgagttggatttgaagttttaatgaactg...
Basic information
species | Glycine max |
transcript | GLYMA01G36870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G844195_T03 (Zea mays), 5'ss of exon 4
GTCGAGGCATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGgtgagtaagcaagattttttgccctctgctcctttcataggcaggattattcctctttgaggtttcttag--ttgagttggatttgaagttttaatgaactg--
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GCCGAGGCATTCAACATCCTCTTCGTGGCCTTTTTTTGAGAAGTTACCTTTCTCAAATAAGCAGAGACAAATTGCCTGATATTGGTTCTGAGTACGAAGGgtactgtacctttacttaatgccatga---tatttcttaaccaa-actattttgtttagagtttcaatagcatcatgctattttttggacaagagttagcttat
upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G825524_T01 (Zea mays), 5'ss of exon 4
GTCGAGGCATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGgtgagtaagcaagattttttgccctc-tgctcctttcataggcaggattattcctctttgaggtttcttagttgagttggatttgaagttttaatgaactg
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GCCGAGGCATTCAGCATCCCCTTCGTGGCCTTTTTCTGAGAAGTTATCTTTCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacctttacttcatgtcatgatattacttaaccaagcctttttagagtt-tcaatagtatcaagctaatttttggccaagagttagtttgttctt
upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 4
GTCGAGGCATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGgtgagtaagcaagattttttgccctctgctcctttcataggcaggattattcctctttgaggtttcttagttgagttggatttgaagttttaatgaactg-
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GCCGTGGCATCCAACATCCTGTACGTGGCCTCTTCCTAAGGAGTTACCTTTCTCAAGTCAGTAGGGATAAACTACCTGATATTGGTTCTGAATATGAAGGgtaagaaaatca-attggtgaatttgtgttgcattttgattttatatagtagggagttcatttttgtggctgaaagtaaaactcagtttctggagaccagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193547605|gb|FK504566.1|FK504566EST: TCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGG GGATGCGGATACTGTAGCAGATGCTGTAGAGTTCGTGCTCCAAAATTTCAC
genomic: TCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGgtgagtaagc ... acaactgtagGGATGCGGATACTGTAGCAGATGCTGTAGAGTTCGTGCTCCAAAATTTCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCGAGGCATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGgtgagtaagcaagattttttgccctctgctcctttcataggcaggattattcctctttgaggtttcttagttgagttggatttgaagttttaatgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctgc