1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACACGTGCCAATGTGGAAAGGGGTCAAGGTTTCTTACACGATCATTGCAGCATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTGgtatgcatcttatgacaataaactaaaaattatataatgaacctaacattaggaccttatataactaatggaataccatatagtataatagtatattctaatttattatatgtaacttcaaatttacag
species | Glycine max |
transcript | GLYMA01G36590.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTG ATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGCEST: gi|254314418|gb|GR832003.1|GR832003
genomic: ATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTGgtatgcatct ... aaatttacagATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
EST: CATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTG ATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGCEST: gi|192334352|gb|FK024423.1|FK024423
genomic: CATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTGgtatgcatct ... aaatttacagATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
EST: CATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTG ATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
genomic: CATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTGgtatgcatct ... aaatttacagATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACGTGCCAATGTGGAAAGGGGTCAAGGTTTCTTACACGATCATTGCAGCATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTGgtatgcatcttatgacaataaactaaaaattatataatgaacctaacattaggaccttatataactaatggaataccatatagtataatagtatattctaatttattatatgtaacttcaaatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG