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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgactaaactacttggtagagaagagctgggttggttgatgcaagatctaatttactaattttaatgtcaatttttgggtgatgtag

Basic information

species Glycine max
transcript GLYMA01G35190.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35190.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 4
TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgactaaactacttggtagagaagagctgggttggttgatgcaagatctaatttactaattttaatgtcaatttttgggtgatgtag
|||||  | || ||||| |||||||| ||||||||||| | ||||||  || | |||| |||||||||||||||||| ||||| ||||||||  ||||     |||     |||  ||    ||  ||  |   |||    | | ||| | ||   | |||| ||   ||||  || |  ||
TCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATGgtatgtgatatccctatcaactagtaaa---ttgttttcatcagtgct---tattattaaatatgataaatgcca---tttgtctgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336468|gb|GR842647.1|GR842647
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|254345622|gb|GR855958.1|GR855958
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|14205773|gb|BG839451.1|BG839451
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|193479799|gb|FK445480.1|FK445480
EST:     TTTGTAC-TTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAAACAGTTTTCTNA
genomic: TTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGG-AAAAACTGTTTTCTGA
EST: gi|193578725|gb|FK535299.1|FK535299
EST:     TGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: TGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|192299757|gb|FG990052.1|FG990052
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|208067113|gb|GD862205.1|GD862205
EST:     GAAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTTGAGTACATG                         GAATGCAACCTAT
genomic: GAA-GTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTT-GAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTAT
EST: gi|26048711|gb|CA785164.1|CA785164
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|22522544|gb|BU081355.1|BU081355
EST:     AGGAAGTTATTCCAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA