1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTATGTCAGGAATGCCAAACATTAATTGACAACCATGATCAGATAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAGgtgcatttccatccttgattaaaaggctaattgtctaatactcattctactgcttcatagttaagagttgttatttagaactttctccctcccacttttt...
species | Glycine max |
transcript | GLYMA01G33880.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAG GATGTTGAAGGTATGATGTCTATCTCTGATGAGGCAGCCGAGGCTCGGGATEST: gi|208133886|gb|GD929607.1|GD929607
genomic: AGATAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAGgtgcatttcc ... gttctgatagGATGTTGAAGGTATGATGTCTATCTCTGATGAGGCAGCCGAGGCTCGGGAT
EST: TAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAG GATGTTGAAGGTATGATGTCTATCTCTGATGAGGCAGCCGAGGCTCGGGATEST: gi|208263826|gb|GE065234.1|GE065234
genomic: TAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAGgtgcatttcc ... gttctgatagGATGTTGAAGGTATGATGTCTATCTCTGATGAGGCAGCCGAGGCTCGGGAT
EST: AGATAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAG GATGTTGAAGGTATGATGTCTATCTCTGATGAGGCAGCCGAGGCTCGGGAT
genomic: AGATAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAGgtgcatttcc ... gttctgatagGATGTTGAAGGTATGATGTCTATCTCTGATGAGGCAGCCGAGGCTCGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTATGTCAGGAATGCCAAACATTAATTGACAACCATGATCAGATAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAGgtgcatttccatccttgattaaaaggctaattgtctaatactcattctactgcttcatagttaagagttgttatttagaactttctccctcccacttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc