1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGCCTTCCCGACATGTGTGTCTGTGAACAACACTGTCTGTCACTTCTCTCCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAATgtaagtctccttttttggagcaattgtttgtgatagatggtgaaaaaatggtatagatatatttggctgttattggtgactggatgttaaaagtgtgtttggttcgttacag
species | Glycine max |
transcript | GLYMA01G29420.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAAT TGACATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACCCAEST: gi|192326702|gb|FK017329.1|FK017329
genomic: CCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAATgtaagtctcc ... ttcgttacagTGACATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACCCA
EST: CCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAAT TGACATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACCCAEST: gi|298195396|gb|HO039227.1|HO039227
genomic: CCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAATgtaagtctcc ... ttcgttacagTGACATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACCCA
EST: CCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAAT TGACATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACCCAEST: gi|13478014|gb|BG507662.1|BG507662
genomic: CCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAATgtaagtctcc ... ttcgttacagTGACATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACCCA
EST: CCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAAT TGACATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACCCA
genomic: CCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAATgtaagtctcc ... ttcgttacagTGACATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCCTTCCCGACATGTGTGTCTGTGAACAACACTGTCTGTCACTTCTCTCCTCTTGCCAGTGATGAAACAGTGTTGGAAGACGGTGATATAGTGAAAATgtaagtctccttttttggagcaattgtttgtgatagatggtgaaaaaatggtatagatatatttggctgttattggtgactggatgttaaaagtgtgtttggttcgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA