Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGAAAGTTTTGAAAGACGACATTGAGATAGTTGAGTACTTGCCGGTCCAATATGCATCATTGAAACCTCTTGTGAAGGCCCCTGTTTCCTGGTCAAAGgtatggagcactaaccaattctatctgacaacattgaaacaatttctattcttttttagtgcaacagtggcttagatgcttcatttgcag

Basic information

species Glycine max
transcript GLYMA01G27000.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27000.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g01650.t01 (Vitis vinifera), 5'ss of exon 5
CATGAAAGTTTTGAAAGACGACATTGAGATAGTTGAGTACTTGCCGGTCCAATATGCATCATTGAAACCTCTTGTGAAGGCCCCTGTTTCCTGGTCAAAGgtatggagcactaaccaattctatctgacaacattgaaacaatttctattcttttttagtgcaacagtggcttagatgcttcatttgcag
|||  | ||||| || || || ||||||||||||   |  |||||     |||||||| || | || ||||||   |||||||| |||||||||||||||||||| ||   |||  |||        |||| |    | |  ||||  ||||  |||  |  | |  | ||||||||| |||||||||||
CATAGAGGTTTTAAACGATGATATTGAGATAGTTCCATCTTTGCCACAGAAATATGCAGCAATTAAGCCTCTTCAAAAGGCCCCGGTTTCCTGGTCAAAGgtatgaagtcttaa--aat--------acaaaagcacacccctttcatttctcattttttagagctttagcttagatgtttcatttgcag