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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttctttttacatatttaaatcattttatgttaaatatattaacatcattaattcattgtatcctgatagtggttatgcattatgaaaattgatg...

Basic information

species Glycine max
transcript GLYMA01G25940.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4397406|gb|AI496403.1|AI496403
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|58014614|gb|CX701356.1|CX701356
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|192325446|gb|FK018387.1|FK018387
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCGTGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|120494647|gb|EH222814.1|EH222814
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|18690708|gb|BM519556.1|BM519556
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|8403449|gb|BE059083.1|BE059083
EST:     TCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: TCAGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|14259203|gb|BG882111.1|BG882111
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|9564578|gb|BE474087.1|BE474087
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|19052912|gb|BM731579.1|BM731579
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|7925135|gb|AW831161.1|AW831161
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|298198188|gb|HO039727.1|HO039727
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|15204528|gb|BI427296.1|BI427296
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|151406778|gb|EV276593.1|EV276593
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: gi|24206299|gb|BU965552.1|BU965552
EST:     GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG                         TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC