Sequence
atgc intronic sequence ATGC exonic sequenceGGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgttgaagcttccatctattttgttatttttctcatttttacactgaagtcttaacacatttttgaaaaatatttctcttctgtgtaacaatcag
Basic information
species | Glycine max |
transcript | GLYMA01G22620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g01439.2 (Oryza sativa), 5'ss of exon 3
---GGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgtt---------gaagcttcc--------atctattttgttatttttctcatttttacactgaagtcttaacacatttttgaaaaatatttctcttctgtgtaacaatcag------------
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GAAGGACACAACTTCTCTGGGATCAACAACATCAAGT---GCCTTTGATGTGAGAAGCAACATGATTGGAGAGATTGAGAATAGATCAACATTCCTCTTAGCTgtaagttattcaagatgatgcttcctttcagaaatatatatactaccgaattcccttagtccattagtaattcaggtagattattatgaggactgactttttatataaaaaaatggatttgtttcag
upper sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g01449.1 (Oryza sativa), 5'ss of exon 4
---GGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgtt---------gaagcttccatctat-----tttgttatttttctcatttt-tacactgaagtcttaacacatttttgaaaaatatttctcttctgtgtaacaatcag------------
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GAAGGACACAACTTCTCTGGGATCAACAACATCAAGT---GTCTCTGATGTGAGAAGCAACATGATTGGAGAGATTGAGAATAGATCAACATTCCTCTTAGCTgtaagttattcaagatgatgctacctttcagaaatatatactactgaattcctttagtccactgctaattcaggtagattattatgaggacttactttttatataaaaaaatggatttgtttcag
upper sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G062738_T01 (Zea mays), 5'ss of exon 4
GGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgt------tgaagcttccatct---------attttgttatttttctcatttttac-actgaagtcttaacacatttttgaaaaatatttctcttctgtgtaacaatcag----------------------------
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AAAAAGGGAGACATCTTTAGGGTCAATATCATCCAATGTATCTGATGCCAGAAGTAATATGATTGGAGAGATTGAGAACAGATCAACATTCCTCTTAGCTgtaagtattttctgctggcaccatcttgaacaaaaatcctgtgaaatttatgagttccactattaatgcataattaaaactagtaatcagatttcaataatgaaaagtgacaaatgttttataaaaacatggaatgtttcag
upper sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G396927_T01 (Zea mays), 5'ss of exon 1
GGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatg------ttgaagcttccatct---------attttgttatttttctcatttttac-actgaagtcttaacacatttttgaaaaatatttctcttctgtgtaacaatcag----------------------------
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-------------------------ATGTCATCCAATGTTTATGATGCCAGAAGTAACATGATTGGAGAGATCGAGAACAGATCAACATTCCTCTTAGCTgtaagtattttttgccggcaccacctggcacaagaatcctgccaaatttatgagttccactattaatacataattataactagtaaccaaattttaataatgcaaagtgacaaatgttttataaaaacatggaatgctccag
upper sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G25690.2 (Arabidopsis thaliana), 5'ss of exon 5
GGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgttgaagcttccatctattttgttatttttc-tcatttttacactgaagtcttaacacatttttgaaaaatatttctcttctgtgtaacaatcag
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AGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAgtaagttcacactttcaa-tataatgttaaatgcaattggatttgaaacaaagaatcaat---tgtttaaacttgattacag-----------------
upper sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 4
GGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgttgaagcttcc-atctattttgttatttttctcatttttacactgaagtcttaa---cacatttttgaaaaatatttctcttctgtgtaac--aatcag
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GAAGGACACACCATCTTTGGTCTCTTCAACATCTAATGCAGCAGATGCCAGGAGCAACATGATTGGTGAAATTGCAAACAAATCATCATTCCTTTTAGCTgtacgttaaattttcccatacatccatttatcttctcaggcaggttgtttgggtgttcatttctcaaatttaacaaatattgaaactggatggactggaaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192294897|gb|FG987586.1|FG987586EST: GGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTGGCT GTGAAAGCTGATGTAGAAACACAAGGTGATTTTGTCGTGTCCTTGGCAGCT
genomic: GGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgttgaa ... taacaatcagGTGAAAGCTGATGTAGAAACACAAGGTGATTTTGTCATGTCCTTGGCAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgttgaagcttccatctattttgttatttttctcatttttacactgaagtcttaacacatttttgaaaaatatttctcttctgtgtaacaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA