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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCACGCCTAAACAGATCAGGGAGCTGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttgtgtgtgtaactaatttggtcattttaatttcttgccccatttctatgatcttacatattttccctttttggtgctgtgccaaaattgagt...

Basic information

species Glycine max
transcript GLYMA01G21900.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G21900.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g22020.1 (Oryza sativa), 5'ss of exon 4
CTGCCACGCCTAAACAGATCAGGGAGCTGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttgtgtgtgtaactaatttggtcattttaatttcttgccccatttctatgatcttacatattttccctttttggtgctgtgccaaaattgagt------------------
  || ||||| || |||||| |||||||||||||||| |||||||| ||||| || || ||||| || ||||| |||||  |   || | |   | ||| ||||  |   || |  ||||  | ||     || | ||      ||| | | | | | |  ||| |  || ||| ||                  
TAGCGACGCCCAAGCAGATCCGGGAGCTGATGAAGGTGGATGGCCTCACCAACGACGAGGTCAAGAGCCATTTGCAGgtcagcaatg-gcggaca-ctactttgccctaatttaactcttaacacacgcggataacct-----gtttactcctctcgatcatgtccttaatttgtgtttcgcttggggttcacag

upper sequence: GLYMA01G21900.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G25550.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGCCACGCCTAAACAGATCAGGGAGCTGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttgtgtgtgtaactaatttggtcattttaatttcttgccccatttctatgatcttacatattttccctttttggtgctgtgccaaaattgagt
 ||| |||||||| ||||| || || || |||||||| |||||  |||| ||||| ||||| |||||||||||||||||          |    |  | || |  ||| |  ||  |     |  | |||||| || ||    |  || | |  ||  |   |              
TTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGTCATTTACAGgta-acaaaacataatcattttatgttctcactacaacatagattcatagttctataatttttatcaactttcttgatttttatag--------------

upper sequence: GLYMA01G21900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 4
CTGCCACGCCTAAACAGATCAGGGAGCTGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttgtgtgtgtaactaatttggtcattttaatttcttgccccatttctatgatcttacatattttccctttttggtgctgtgccaaaattgagt
 ||| || || || ||||||||||| ||||||||||||||||| || || ||||||||||||||||| ||||||||||||||| |      |    | || | |   |   |   |  |||     |   | | || ||    |||   | |  |  |     ||    |    || 
TTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGgtttgtataaaactttcctcgaagtagcaaaaactttatctttgttatgtcattttcattttggtaattcatcttagtatggatcctgatggatgctagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698479|gb|BW667276.1|BW667276
EST:     TGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAG                         AAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGT
genomic: TGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttg ... tcttgtacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGT
EST: gi|192318502|gb|FK006174.1|FK006174
EST:     TGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAG                         AAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGT
genomic: TGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttg ... tcttgtacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGT