1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtgattttttcatttcttttctttctctttctatttgtttagataaattttaattaaaatattttttacgtcaaatgtattgtttctacaacttcattccattttgatag
species | Glycine max |
transcript | GLYMA01G20670.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCEST: gi|213598669|gb|DB964263.1|DB964263
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCEST: gi|193672030|gb|FK616300.1|FK616300
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCEST: gi|298187219|gb|HO034368.1|HO034368
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCEST: gi|151395622|gb|EV265499.1|EV265499
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCEST: gi|192323620|gb|FK017486.1|FK017486
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCEST: gi|18040534|gb|BM308828.1|BM308828
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCEST: gi|208300486|gb|GE100251.1|GE100251
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACAACCTGTTACTGCCCCAGCTGCTCCTGCEST: gi|9986013|gb|BE660019.1|BE660019
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACA-CCTGTTACTGCCCCAGCTGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCEST: gi|9986012|gb|BE660018.1|BE660018
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGC
EST: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAAC GCCTACACCTGTTACTGCCCCAGCTG
genomic: TCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtg ... attttgatagGCCTACACCTGTTACTGCCCCAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACgtcagtcgtgattttttcatttcttttctttctctttctatttgtttagataaattttaattaaaatattttttacgtcaaatgtattgtttctacaacttcattccattttgatag
- - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA