1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCTTCACATTCAGTAATTTCAGGTACTGTTAAGAAACCTATCGGTGCTAAAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaatagttatctttgtttgcagatgtatgctagaagtgcctgttggttgttggtttttcatttgaccactaattatcctaatgaaaatgcag
species | Glycine max |
transcript | GLYMA01G12340.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTEST: gi|26048259|gb|CA784787.1|CA784787
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTEST: gi|15663128|gb|BI700499.1|BI700499
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTEST: gi|8670479|gb|BE191586.1|BE191586
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTEST: gi|7028815|gb|AW458598.1|AW458598
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTCACATTCAGTAATTTCAGGTACTGTTAAGAAACCTATCGGTGCTAAAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaatagttatctttgtttgcagatgtatgctagaagtgcctgttggttgttggtttttcatttgaccactaattatcctaatgaaaatgcag
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