1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGAGGAGGGAAAAGATAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttctaagtttgaacccagaaaattcactatgtcatattgttatttgtgtttatgtatcacatccttttaacattgttatttttactttctatgcttttag
species | Glycine max |
transcript | GLYMA01G09400.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAAGTGAGAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCAEST: gi|208160240|gb|GD953496.1|GD953496
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
EST: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCAEST: gi|193467285|gb|FK433924.1|FK433924
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
EST: TAAGTGAGAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCAEST: gi|208231305|gb|GE033494.1|GE033494
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
EST: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCAEST: gi|208027231|gb|GD822633.1|GD822633
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
EST: TAAGTGGGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCEST: gi|207712306|gb|GD693770.1|GD693770
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATC
EST: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCAEST: gi|23734956|gb|BU765737.1|BU765737
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
EST: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCAEST: gi|207711906|gb|GD693720.1|GD693720
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
EST: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCAEST: gi|193490748|gb|FK457749.1|FK457749
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
EST: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCAEST: gi|208182235|gb|GD980248.1|GD980248
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCA
EST: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAG GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
genomic: TAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttcta ... atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGGAGGGAAAAGATAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGgtggcttctaagtttgaacccagaaaattcactatgtcatattgttatttgtgtttatgtatcacatccttttaacattgttatttttactttctatgcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG