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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCATCCTCCATAGTGTTGATAATTTACACCTTCATATCAATGTGGTTTGTAGGTGGCCTCACTACCTTCCATTTGTATTTGATAAGTACCAAGCAGgtaagcaccatttgtcttaatacacatgctctag

Basic information

species Glycine max
transcript GLYMA01G08200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G08200.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G26935.1 (Arabidopsis thaliana), 5'ss of exon 4
AACTCCATCCTCCATAGTGTTGATAATTTACACCTTCATATCAATGTGGTTTGTAGGTGGCCTCACTACCTTCCATTTGTATTTGATAAGTACCAAGCAGgtaagcaccatttgtcttaatacacatgctctag--------------------------------------------------
||||||  ||||||| ||  | ||||| ||||| |||||||||||||||||||| |||||| | ||    |||||||| ||| | || || || || |||||| |   |     ||  ||| | ||  ||||                                                    
AACTCCTGCCTCCATTGTTCTAATAATATACACATTCATATCAATGTGGTTTGTTGGTGGCTTAACAGTTTTCCATTTATATCTCATCAGCACGAACCAGgtatgttgcgaccatcc-aatccccaccctctcttaaggaatcacggtatctctgtaaccattgatttatctttgttcttgcag

upper sequence: GLYMA01G08200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 4
AACTCCATCCTCCATAGTGTTGATAATTTACACCTTCATATCAATGTGGTTTGTAGGTGGCCTCACTACCTTCCATTTGTATTTGATAAGTACCAAGCAGgtaa-gcaccatttgtcttaatacac--atgctctag--------------------------------------------------------------------
 || ||  ||||||| ||| | ||| ||||||||||||||||| |||||||||| |||||||| ||| | |||||||| ||| |||| ||||| || ||||||| |  |   |  || |||| |    || || |||                                                                    
GACCCCTGCCTCCATTGTGCTAATAGTTTACACCTTCATATCAGTGTGGTTTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggctcatcttcctaatgctatgattctgtagccgaaattttaggtcaaaatattgtgcctaacagcagaattttccttctctattccattcttttgcag