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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttactggttctctcattctgcatggatccatttaattgtttttgttgctagctcttgtctgaatatcattactgaaacttacag

Basic information

species Glycine max
transcript GLYMA01G07070.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G07070.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g00620.t01 (Vitis vinifera), 5'ss of exon 4
CCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttactggttctctcattctgcatggatccatttaattgtttttgttgctagctcttgtctgaatatcattactgaaactt--acag
 |||||| ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||||   |   ||| ||       |||| || |  || ||   ||||    | | | | | | |||| | | |  | ||||||||  ||||
GCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcatatgtt-tcaagcatagcataga-ctgttcaagccttttaaaagattgttatggcctga-tttgagaaatgaaacttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21638509|gb|BM139555.1|BM139555
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|18735212|gb|BM528632.1|BM528632
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|192303428|gb|FG997458.1|FG997458
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|192300602|gb|FG988899.1|FG988899
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|12773324|gb|BG238251.1|BG238251
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|7590427|gb|AW706180.1|AW706180
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|58019744|gb|CX706486.1|CX706486
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|58019157|gb|CX705899.1|CX705899
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|21889266|gb|BQ742479.1|BQ742479
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|214004600|gb|DB988970.1|DB988970
EST:     TTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: TTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|12773840|gb|BG238767.1|BG238767
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|58015355|gb|CX702097.1|CX702097
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|58019309|gb|CX706051.1|CX706051
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|58022129|gb|CX708870.1|CX708870
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|192302132|gb|FG995812.1|FG995812
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|18735497|gb|BM528797.1|BM528797
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGANGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|26057311|gb|CA800225.1|CA800225
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
EST: gi|58018950|gb|CX705692.1|CX705692
EST:     GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA
genomic: GCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttact ... aaacttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCGGAGTTGGA