Sequence
atgc intronic sequence ATGC exonic sequenceGCTCTCTCAAAAAGAATCCACTATGGCAAATTTGTTGCTGAGGCAAAGTTTCAAGATGCCCCTTCTGAATATGTAGCTGCCATTGAAGCGAAAgtaaacttttgcatacctgattcattttattttccattgtgattctagataccatacttaattttctgatgctacattaatccatgcttcacag
Basic information
species | Glycine max |
transcript | GLYMA01G06660.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G06660.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 5'ss of exon 5
GCTCTCTCAAAAAGAATCCACTATGGCAAATTTGTTGCTGAGGCAAAGTTTCAAGATGCCCCTTCTGAATATGTAGCTGCCATTGAAGCGAAAgtaaac-ttttgcatacctgattcattt-tattttccattgtgattctagataccatacttaattttctg-atgctacattaatccatgcttcacag------------------------------------------------
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GCGCTCTCCAAAAGAATTCACTATGGTAAGTTTGTGGCAGAGGCTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGgtttgtgttctgttttgctgtataatctgtctttatcatgggaagcaaataaattccatgtgttttcttgtacattactttaggt-acatatcaaagttgagtctattatgcaagcggctaattatttttatctgggaatttcag
upper sequence: GLYMA01G06660.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G116087_T03 (Zea mays), 5'ss of exon 5
GCTCTCTCAAAAAGAATCCACTATGGCAAATTTGTTGCTGAGGCAAAGTTTCAAGATGCCCCTTCTGAATATGTAGCTGCCATTGAAGCGAAAgt--aaacttttgcatacctgattcattttattttccattgtgattctagat----accatacttaattttctgatgctacattaatccatgcttcacag-----------------
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GCACTCTCCAAAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgcttttgttccaactattagtatttttttatttcagagtttcagaacaaaatgatatctcgattcatg-tgaaaaaactgtctatttattgtcactttttgtaaaattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58021756|gb|CX708497.1|CX708497EST: CAAAGTTTCAAGATGCCCTTTCTGAATATGTAGCTGCCATTGAAGCGAAA GACAGGAAACTTTTGCTGGATTTGTTGACATATGAAACAGTGGAGGAATTA
genomic: CAAAGTTTCAAGATGCCCCTTCTGAATATGTAGCTGCCATTGAAGCGAAAgtaaactttt ... tgcttcacagGACAGGAAACTTTTGCTGGATTTGTTGACATATGAAACAGTGGAGGAATTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCTCTCAAAAAGAATCCACTATGGCAAATTTGTTGCTGAGGCAAAGTTTCAAGATGCCCCTTCTGAATATGTAGCTGCCATTGAAGCGAAAgtaaacttttgcatacctgattcattttattttccattgtgattctagataccatacttaattttctgatgctacattaatccatgcttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC