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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACATTTAAGCTAACACTTCAGTTCATTGAGGATTATCCTAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtaggaaactagaactcgccttgtctgtctttctgagccaacatgtataggaccctgcaatcaataatggaattgaaatgcaaccacttgaactat...

Basic information

species Glycine max
transcript GLYMA01G05080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G05080.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 4
GCACATTTAAGCTAACACTTCAGTTCATTGAGGATTATCCTAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtaggaaactagaactcgccttgtctgtcttt--ctgagccaacatgtataggaccctgcaatcaataat--ggaattgaaatgcaaccacttgaactat
| || || ||||| ||||||||||| | ||| ||||||||||| || |||||  ||||||| ||||||||||  ||||||||||| |||||||||       |            |   || || |  |   |      | | |   |   |  ||  | | ||  || |||      |||     | |     
GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACAgtaagcctctctccctgctgtttaatacttgcctgtggcatggttcctgtttcttacaagttataagtatttatgtggcatttcggaacaatagtctaac----

upper sequence: GLYMA01G05080.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 5'ss of exon 5
GCACATTTAAGCTAACACTTCAGTTCATTGAGGATTATCCTAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtaggaaactagaactcgccttgtctgtctttctgagccaacatgtataggaccctgcaatcaataatggaattgaaatgcaaccacttgaactat--
| || |||||  | || |||||||| |  ||||||||||| ||||| |||||| | || ||||||||||||  |||||| |||||||| ||||||| |||  | ||||||   ||| |      |||| | |   ||  |||  ||     ||  ||| | |     | |  |||||  |  | |  |    
GTACGTTTAAATTGACGCTTCAGTTTACAGAGGATTATCCGAATAAGCCACCAACTGTACGCTTTGTTTCTAGAATGTTCCATCCAAATAgtaagttggacgcaagaactatgcttttacccaattctca-ctttcaattatgagagttctcagccaaca-tatgcctaatgtgcaaatatgtaacgtgcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933973|gb|BU551112.1|BU551112
EST:     TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
genomic: TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
EST: gi|14126011|gb|BG790449.1|BG790449
EST:     TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
genomic: TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
EST: gi|19452681|gb|BM954091.1|BM954091
EST:     TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
genomic: TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
EST: gi|19452497|gb|BM953907.1|BM953907
EST:     TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
genomic: TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
EST: gi|151402063|gb|EV271876.1|EV271876
EST:     TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
genomic: TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
EST: gi|19348294|gb|BM892826.1|BM892826
EST:     TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
genomic: TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
EST: gi|11273919|gb|BF324308.1|BF324308
EST:     TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC
genomic: TAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTC