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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaagtgcccgaaactacaataagattgcatatttcctcctttttgttagtctaatattgccccaattcag

Basic information

species Glycine max
transcript GLYMA01G04930.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaag------tgcccgaaactacaataagattgcatatttcctcct---ttttgttagtctaatattgccccaat--tcag------
 ||||| || ||||||||||| ||||||||||||||||||||||||||| | ||||| || ||| ||||||| ||||||||||| ||  |  |||| || ||| |      ||   || | |  ||  | |||  | || | |   |   || |   | ||| ||||| |   |||  |||       
AGCACTTGGTGCTGCTAAGGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGGCCAGTTATCTATCGGGATTTCAAAACTTCAAATATTCTTTTAGACGCGgtatgcaaccatgtttgagaatcaaaacatattagaaatgttcatttagattgtaacattctcatatttcttaaatattcattttcag

upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaagtgcccgaaactacaataagattgcatatttcctcct------------ttttgttagtcta-atattgccccaattcag---
||| || ||||| || |||||||||||||| |||||||||||||| ||| ||||||| || ||  | ||||||||||| || || ||| | |||||||| ||||||        ||  |||  |||| | |||| |   |             | |||| | | |  |||||   | | |   |   
TGCTCTTGGAGCAGCAAAGGGTCTTGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTTATTTACCGTGATTTTAAAACATCTAATATACTGCTAGATGCTgtaagttttaagtccttgaattggattacgtattgcacaccacacgattcacatcttgtaattttgtatattatgctactcttgcag

upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G150806_T01 (Zea mays), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaagtgcccgaa----actacaataagattgcat-atttcctcctttttgtta-gtctaatattgccccaattcag---
|||||| ||||| || |||||||| ||||| |||||||||||||| ||| | ||||| || ||| | ||||||||||| || || ||| |||| ||||| ||||||    |||    | ||      |  ||  | |||   | | |  ||||   ||| || ||       ||      
TGCACTGGGAGCAGCAAAGGGTCTGGCTTTCCTTCATGAAGAAGCAGAAAGTCCAGTCATTTATCGTGATTTTAAAACATCTAATATACTACTGGATGCGgtaagttaatgaataggattatgcagtgtgtgtctcattatttacatactgttgcatcttatgttatattgcttgtatag

upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaagtgcccgaa----actacaataagattgcat-atttcctcctttttgtta-gtctaatattgccccaattcag---
|||||| ||||| || |||||||| ||||| |||||||||||||| ||| ||||||| || ||| | ||||||||||| || || ||| | || ||||| ||||||    |||    | ||      |  ||| | ||   ||   |  || ||  ||  || ||       ||      
TGCACTCGGAGCAGCAAAGGGTCTGGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTCATTTATCGCGATTTTAAAACATCTAATATACTGCTGGATGCGgtaagttaatgaataggattatgcagtgtgtgcttcatgatctatatactgctacatcatatgttatattgcttgtacag

upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaagtgcccgaaact--acaataagattgcatatttcctcctttttgttagtctaatattgccccaattcag
||| || || ||||| || || || |||||||||||||||||||||||| |||||||||| ||| |||| || ||||| || || ||  |  ||||||| |||||   |   |     |   ||| | |    |||    |   | | || | |||| ||        |||||
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattgaaatgttaaaaatattcattcatacaaatgtatttg-ctaacatattttt--ttcag

upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaagtgcccgaaactacaataagattgcatatttcctc------ctttttgttagtctaatattgccccaattcag
||||||||| ||||||||||||||||| ||||||||||| ||||| ||| | ||||| |||||| | |||||||| || || |||||  || | ||||||||||||     |||||   ||||  |  | | | ||  |      | ||   |   |   ||     || | |||||
TGCACTAGGTGCTGCTAAGGGTCTTGCATTTCTTCATGAGGAAGCAGAAAGGCCAGTTATATATCGTGATTTTAAGACCTCCAACATCCTATTGGATGCAgtaagtaataaaaactgtgataaattcacgtttgtctcctaatatcattccatcttttatatgacatcctatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493846|gb|EH222013.1|EH222013
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCA                         GACTACAATGCCAAGCTCTCAGACTTTGGTCTTGCCAAAGATGGTCCAGAA
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaagtgccc ... cccaattcagGACTACAATGCCAAGCTCTCAGACTTTGGTCTTGCCAAAGATGGTCCAGAA