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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttatttgtgtgtaatgggattttagcttttattatatttattatctatagactactatagggttttgcaatattgtgaag

Basic information

species Glycine max
transcript GLYMA01G04170.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04170.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g02210.t01 (Vitis vinifera), 5'ss of exon 4
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttatttgtgtgtaatgggattttagcttttattatatttattatctatagactactatagg-gttttgcaatattgtgaag
|| |||| ||||||||  | ||||||||| | ||||| ||||| || || ||  | || ||||| |||||||||||||||||||||||| | ||||||||||||||  |  ||  ||  ||  |   || | || |    |||| ||| |  |    ||  |||||| ||      ||  | |  ||
TACTCTTCTACTTCATCCTAGAGGACTTTGTTTTCTATTGGGGGCACAGGATTTTACATACAAAATGGTTATACAAGCATGTGCACAGTATCCATCATGAgtaagtgaaaatggttgacataagtaattggtttgt----tattcattcttca-gtgctcttataggtgtaactggatgatatatag

upper sequence: GLYMA01G04170.3 (Glycine max), 5'ss of exon 4
lower sequence: PP1S130_70V6.1 (Physcomitrella patens), 5'ss of exon 4
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagt--ttatttgtgtgtaatgggattttagcttttattatatttattatctatagactactatagggttttgcaatattgtgaag--------------
|| | | ||| || || || || || || || || || ||||| ||  | || |||||||| |||||| | |||||||| |||||||| |||||||||||||  ||  |   |  | || | | | |||  |  ||  |   || |  || |||   |  | ||| | |  ||   | ||||     |              
TACTATCTTATTTTATCTTAGAAGATTTCATCTTTTATTGGGGGCACCGTATTCTGCACACCAAGTGGCTCTACAAGCACGTGCACAGCGTTCATCATGAgtgtgtgctctctactctgaattcgaattcgaatttcaaagctagtagttgtctggtg--tcctacatgtgttctaattattcacctgcccttcgttatcag

upper sequence: GLYMA01G04170.3 (Glycine max), 5'ss of exon 4
lower sequence: EFJ22305 (Selaginella moellendorffii), 5'ss of exon 4
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttatttgtgtgtaatgggattttagcttttattatatttattatctatagactactatagggttttgcaatattgtgaag
|  |||  ||||||||  | ||||||||||| ||||||||||| ||  || | || ||||| |||||| | ||||||||||| ||| |||||||||||||||||||||  |  |  |   |  || ||   |  |   | |   | || |  ||||                              
TCCTCTCCTACTTCATCCTTGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgctcctccggtttttgactt--accatctcttttcctgttcttgatag------------------------------

upper sequence: GLYMA01G04170.3 (Glycine max), 5'ss of exon 4
lower sequence: EFJ25588 (Selaginella moellendorffii), 5'ss of exon 3
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttatttgtgtgtaatgggattttagcttttattatatttattatctatagactactatagggttttgcaatattgtgaag
|  |||  ||||||||  | ||||||||||| ||||||||||| ||  || | || ||||| |||||| | ||||||||||| ||| |||||||||| ||||||||||  |  |      |  || ||   |  |   | |   | || |  ||||                              
TCCTCTCCTACTTCATCCTCGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCACGAgtaagtttgctccttcagtttttgactt--accatctcttttcctgttcttgatag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283065|gb|BE020626.1|BE020626
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATC
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATC
EST: gi|9258070|gb|BE346217.1|BE346217
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|10237687|gb|BE806575.1|BE806575
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|58019980|gb|CX706722.1|CX706722
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGT-TTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|298174870|gb|HO014787.1|HO014787
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTG
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTG
EST: gi|192324625|gb|FK016816.1|FK016816
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|192324564|gb|FK016455.1|FK016455
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTCGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|254331888|gb|GR846198.1|GR846198
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|213617700|gb|DB967567.1|DB967567
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|254331887|gb|GR846197.1|GR846197
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|192325313|gb|FK017129.1|FK017129
EST:     ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|13479666|gb|BG509009.1|BG509009
EST:     TACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: TACAAGCATGTGCACAGTGTTCATCATGAgtaagtttat ... tattgtgaagGTATGCTACACCGTTTGGATTGACTTCTGAATATGCTCATCCTGCTGAGAT