Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGACAAGGAATCTGGCCATAAAAAGACCGTGACATCACTTGCTAAGTCTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGgtatgaactttttgtttccctgatttctttttccgttaattctcatgtttgtcttttcttcatgacttgattttattctcctaatattttttgtttaaatttttatttag

Basic information

species Glycine max
transcript GLYMA01G03610.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03610.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 5'ss of exon 4
GTCAGACAAGGAATCTGGCCATAAAAAGACCGTGACATCACTTGCTAAGTCTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGgtatga--actttttgtttccctgatttctttttccgttaattctcatgtttgtcttttcttcatgacttgattttattctcctaatattt--tttgtttaaatttttatttag-----------------------------
||||||||||||| | ||||| |||||||| || ||||||||| | ||  |||  |||||||| |||||  ||||||||||||| || || ||||||| ||||  |  |||  ||||||     | |||| |  || |||  | | || |    || |    ||    ||   |||||| | ||| | |     ||  | || |||||   |                               
GTCAGACAAGGAAACCGGCCACAAAAAGACAGTAACATCACTTTCAAAAGCTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataactcattgttttat--aattctgtgcccatta-cttttatctcaccctctgtaccacttattatctttatttttctattttggagcttcatcaagttttttcctgatgttgttttcttgtcgacaaatctcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726207|gb|BW659572.1|BW659572
EST:     TGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGANCA-GTCTGCTAGG                         CTTTGGGATACTAGAACATTGACTCTTTATCA-GACATATGTCACAGAACG
genomic: TGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGA-CAAGTCTGCTAGGgtatgaactt ... ttttatttagCTTTGGGATACTAGAACATTGACTCTT-ATCAAGACATATGTCACAGAACG
EST: gi|208147287|gb|GD944954.1|GD944954
EST:     CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGG                         CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACGGAACG
genomic: CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGgtatgaactt ... ttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACG
EST: gi|207842792|gb|GD816436.1|GD816436
EST:     CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGG                         CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGG
genomic: CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGgtatgaactt ... ttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGG
EST: gi|209726208|gb|BW659573.1|BW659573
EST:     CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGG                         CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGG
genomic: CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGgtatgaactt ... ttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGG