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GCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAGgtgagcagtgtgttatttaacttattttaacaactaaaaaaacatatatggtagcttttatcagcacttttaaatcccaattttattagcagttcatgac...
species | Glycine max |
transcript | GLYMA01G02480.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAG GAGCTGGAAAAGTTATCACAAAAGTTTGGGGAAAATGTTCTGGATGCAACAEST: gi|192297389|gb|FG990681.1|FG990681
genomic: GAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAGgtgagcagtg ... tcatccatagGAGCTGGAAAAGTTATCACAAAAGTTTGGGGAAAATGTTCTGGATGCAACA
EST: GAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAG -AGCTGGAAA-GT-ATCACAAAAGTTTGGGGAAA-TGTTCTGGATGCAACEST: gi|209701313|gb|BW655908.1|BW655908
genomic: GAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAGgtgagcagtg ... tcatccatagGAGCTGGAAAAGTTATCACAAAAGTTTGGGGAAAATGTTCTGGATGCAAC
EST: GAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAG GAGCTGGAAAAGTTATCACAAAAGTTTGGGGAAAATGTTCTGGATGCAACA
genomic: GAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAGgtgagcagtg ... tcatccatagGAGCTGGAAAAGTTATCACAAAAGTTTGGGGAAAATGTTCTGGATGCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAGgtgagcagtgtgttatttaacttattttaacaactaaaaaaacatatatggtagcttttatcagcacttttaaatcccaattttattagcagttcatgac
- - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaaa