Sequence
atgc intronic sequence ATGC exonic sequenceCAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtattttttgtaaactatactttcttgaagttatcatgctgaatcattagctcatcaactactgttgcctcaaatttatacag
Basic information
species | Glycine max |
transcript | GLYMA01G01740.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G01740.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G35530.1 (Arabidopsis thaliana), 5'ss of exon 5
CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtattttttg-taaactatactttcttgaagttatcatgctgaatcattagctcatcaactactgttgcctcaaattt-atacag------
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CATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTATGTTGCAATGTATCCCCCAGGTGGCATGTACGCACATCCTTCAATGCCTCCGgtactgccaactgtagtagattcaattgcagtgaacataaattaaaatgtagctgttaattatatctttaatatgttccattctgtatcag
upper sequence: GLYMA01G01740.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 5
CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtatttt-ttgtaaactatactttc-ttgaagttatcatgctga-atcattagctcatcaactac----tgttgcctcaaatttatacag----------------
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CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21255865|gb|BQ452753.1|BQ452753EST: TTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCG GGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCT
genomic: TTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtattttttg ... atttatacagGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtattttttgtaaactatactttcttgaagttatcatgctgaatcattagctcatcaactactgttgcctcaaatttatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG