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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATAATGCTGCTTTAAGAGCCCAACCAGCACTAGTTCAAAATGAGCAAAAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatacattaattagattgtcattgttgtcacctactgggatgtatttaataacttttttgttttatttccaactcactgatttctgttgcttgcag

Basic information

species Glycine max
transcript GLYMA01G01460.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410399|gb|EV280214.1|EV280214
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|14008620|gb|BG725224.1|BG725224
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|12688358|gb|BG154694.1|BG154694
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|27426218|gb|CA937738.1|CA937738
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|13311489|gb|BG405140.1|BG405140
EST:     AGTTGNTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AGTTG-TCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|6501937|gb|AW203310.1|AW203310
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|308098687|gb|HO760428.1|HO760428
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGT
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGT
EST: gi|193329181|gb|FK295607.1|FK295607
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCT-CG-A-GATCGAACTATTCCCTTG
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTG
EST: gi|207746550|gb|GD721537.1|GD721537
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|6718923|gb|AW306570.1|AW306570
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|6069811|gb|AW099417.1|AW099417
EST:     AAGTTGGCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCATAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: gi|11688213|gb|BF595889.1|BF595889
EST:     AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG                         TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCATAATGCTGCTTTAAGAGCCCAACCAGCACTAGTTCAAAATGAGCAAAAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatacattaattagattgtcattgttgtcacctactgggatgtatttaataacttttttgttttatttccaactcactgatttctgttgcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT