1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TACAAACTCATCATCTGATCCTGGAGCCGGTGACATTCTAATGGGATTTTTGGGATCTGTTATTCTCTCATTTGCCTTCTCTATGTTCAAACAAAGAAAGgtaaccatctagatttgtaatcgttacttcatgaatcctatactgcagcaaaaaaagtaaagcaaataaaagcaatattttctttcgtcacaggctgttt...
species | Glycine max |
transcript | GLYMA01G01340.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTATGTTCAAACAAAGAAAG CTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAATTTCTACCEST: gi|192322157|gb|FK014053.1|FK014053
genomic: TCTATGTTCAAACAAAGAAAGgtaaccatct ... ctgttttcagCTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAATTTCTACC
EST: TGGGATCTGTTATTCTCTCATTTGCCTTCTCTATGTTCAAACAAAGAAAG CTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAATTTCTACCEST: gi|192322156|gb|FK014052.1|FK014052
genomic: TGGGATCTGTTATTCTCTCATTTGCCTTCTCTATGTTCAAACAAAGAAAGgtaaccatct ... ctgttttcagCTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAATTTCTACC
EST: TGGGATCTGTTATTCTCTCATTTGCCTTCTCTATGTTCAAACAAAGAAAG CTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAATTTCTACCEST: gi|14999186|gb|BI320247.1|BI320247
genomic: TGGGATCTGTTATTCTCTCATTTGCCTTCTCTATGTTCAAACAAAGAAAGgtaaccatct ... ctgttttcagCTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAATTTCTACC
EST: CTCTCATTTGCCTTCTCTATGTTCAAACAAAGAAAG CTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAATTTCTACC
genomic: CTCTCATTTGCCTTCTCTATGTTCAAACAAAGAAAGgtaaccatct ... ctgttttcagCTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAATTTCTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAAACTCATCATCTGATCCTGGAGCCGGTGACATTCTAATGGGATTTTTGGGATCTGTTATTCTCTCATTTGCCTTCTCTATGTTCAAACAAAGAAAGgtaaccatctagatttgtaatcgttacttcatgaatcctatactgcagcaaaaaaagtaaagcaaataaaagcaatattttctttcgtcacaggctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaaa