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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTGgtaggcatttgaaacacagtaatgttggttgtcatatgctgtgatttttctcttcattttatactaatattaaatatccatgcaagcatttgttttgaagtttatcagtttatctaaggtggttgatatttttggaccattcccttcttggtttcag

Basic information

species Glycine max
transcript GLYMA01G01270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 4
GTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTGgtaggcatttgaaacacagtaatg--ttggttgtcat--atgctgtgatttttctcttcattttatactaatattaaatatccatgcaagcatttgttttgaagtttatcagtttatctaaggtggttgatatttttggaccattcccttcttggtttcag
||||||||| || ||||| ||||| || ||||| |||||||||||||| |||||||| || ||| | |||||||| |   |  ||  | || | |    || |  ||||  ||||||||  | | |     || ||  | |  | ||  |                                                                                   
GTATCCCCTTGGCCGTGTGATTGGCGGCACTGTGTATCCTGGTTTGACATTGACAGCTGGAACCATTTGGTGgtatgttatcaaaggaaagcacttgtctgttcctcattaatgctgtggatgtgcctaaaatatttgattggttttgcag----------------------------------------------------------------------------------

upper sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 4
GTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTGgtaggcatttgaaacacagtaatgttggttgtcatatgctgtgatttttctcttcattttatactaatattaaatatccatgcaagcatttgttttgaagtttatcagtttatctaaggtggttgatatttttggaccattcccttcttggtttcag
|||||| || || ||||| |||||||| ||||||||||||||||||||  | || || || ||  |||||||||| |    ||  |     || | || |   |  |    ||  |  |||    |  | |||   | |   | |||      |   ||||                                                                    
GTATCCTCTTGGGCGTGTTATTGGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgactgccaatgcatactattagaaatgcttcattggtagatttgaactactgttagcatgac--tgaattgtttggttggcatag------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724609|gb|BW677716.1|BW677716
EST:     GGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTG                         GGTACTGAATTCCCTAAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
genomic: GGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTGgtaggcattt ... ttggtttcagGGTACTGAATTCCCTAAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
EST: gi|17154085|gb|BM144018.1|BM144018
EST:     GGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTG                         GGTACTGAATTCCCTAAACATACCTCTCTCAGCTGAAACTGTTTGTGTGTT
genomic: GGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTGgtaggcattt ... ttggtttcagGGTACTGAATTCCCTAAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
EST: gi|213590312|gb|DB963861.1|DB963861
EST:     GGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTG                         GGTACTGAATTCCCTAAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
genomic: GGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTGgtaggcattt ... ttggtttcagGGTACTGAATTCCCTAAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT