Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTGTTAAAGCTAGGATTATAATAGCTGGTTTATCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtatgattttattcttatactttgccctagtattttcaaatgcaaagtagggccatactatatttgaaacatattttcattatgacacttgctgattcat...

Basic information

species Glycine max
transcript GLYMA01G01130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01130.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G061419_T01 (Zea mays), 5'ss of exon 5
GATTCTGTTAAAGCTAGGATTATAATAGCTGGTTTATCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtatgattttattcttatactttgccctagtattttcaaatgcaaagtagggccatactatatttgaaacatattttca-ttatgacacttgctgattcat----
||   | |  | || | | |  |  | ||||| || |||||||| ||||| || |||||||||||||||||||| ||    |    || |      ||    | | |   | | ||  ||  |  |||   | | |  |  |  |||||   |||||    | | || | |      
GACAATCTGGAGGCAAAGGTGGTCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaatgactttgtttccatcctcgatgtct---atttcatggtctgttcatg--acactgaatgctcattttggcttatgcttgtagatgttcctagtgt

upper sequence: GLYMA01G01130.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 5
GATTCTGTTAAAGCTAGGATTATAATAGCTGGTTTATCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtatgattttattcttatactttgccctagtattttcaaatgcaaagtagggccatactatatttgaaacatattttcattatgacacttgctgattcat-----------------------------------------------------------------------------------
|||  |||| |||||| | |  |  | ||||||||||||||||| ||||| || |||||||| ||||| ||||||||  |   || || |   |  |  || | |||| |  |      |  | |  | ||  | |  |     ||    |  |||| |   ||| | | ||                                                                                   
GATCATGTTGAAGCTAAGGTCGTGGTTGCTGGTTTATCAACAACATGTAGCCAGAAAATTCATAATCAGTTGgtatgtatgattttttttttctcccaatattttttttatctctcctttgtgactgttcttaaatcaactgtaatcacaaccatgaaa--agctaacttatcttccaacatacatttttcatttttgttgttcattcattggctttcgctgaatgttcctgtttctggcttctttttcttgaag

upper sequence: GLYMA01G01130.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 5
GATTCTGTTAAAGCTAGGATTATAATAGCTGGTTTATCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtatgattttattcttatactttgccctagtattttcaaatgcaaagtag---ggccatactatatttgaaacatattttcattatgacacttgctgattcat--
|||  |||| |   || |||| |  | |||| ||| ||||||||||| ||||||||| |||| ||||| |||||||| |  ||| |||||   || ||  | | |  | | |   |   |     | ||||  ||| ||  |||   ||   |  |||   |||||   | ||    
GATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTGgtatg-taatatgcttatggcttccctcactctgctgagaaatatgattcactgtccattttattttccaaa---atccac-ctattttacttgtacactctaaa