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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTACTCTGTCTATCACTGGGGCGTTGAATACAGTCTTAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAAgtaagaacttcatgccattttgctccttaatctatgggcttctcctagtagtcctcctaattagttaaatttaactgcag

Basic information

species Glycine max
transcript GLYMA01G00430.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495719|gb|EH223886.1|EH223886
EST:     TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAA                         AACAAGGATGGTGGGTGGGGTTTGCATATTGAAGGTCCAAGCACCATGTTT
genomic: TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAAgtaagaactt ... ttaactgcagAACAAGGATGGTGGGTGGGGTTTGCATATTGAAGGTCCAAGCACCATGTTT
EST: gi|213610490|gb|DB958795.1|DB958795
EST:     TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAA                         AACA-GGNATGGTNGGGTGGGGTTTGCATATTGAAGGTCCAAGC
genomic: TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAAgtaagaactt ... ttaactgcagAACAAGG-ATGGT-GGGTGGGGTTTGCATATTGAAGGTCCAAGC
EST: gi|213587324|gb|DB965944.1|DB965944
EST:     TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATATTCATCAA                         AACAAGGATGGTGGGTGGGGTTTGCATATTGAAGGTCCAAGCACCATGTTT
genomic: TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAAgtaagaactt ... ttaactgcagAACAAGGATGGTGGGTGGGGTTTGCATATTGAAGGTCCAAGCACCATGTTT
EST: gi|208029611|gb|GD831989.1|GD831989
EST:     TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAA                         AACAAGGATGGTGGGTGGGGTTTGCATATTGAAGGTCCAAGCACCATGTTT
genomic: TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAAgtaagaactt ... ttaactgcagAACAAGGATGGTGGGTGGGGTTTGCATATTGAAGGTCCAAGCACCATGTTT
EST: gi|193442654|gb|FK408283.1|FK408283
EST:     TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTGTAATCATCAA                         AACAAGGATGGTGGGTGGGGTTTG
genomic: TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAAgtaagaactt ... ttaactgcagAACAAGGATGGTGGGTGGGGTTTG
EST: gi|9564318|gb|BE473827.1|BE473827
EST:     TAACTGAAGATCATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAA                         AACAAGGATGGTGGGTGGGTTTTG-ATATTGAACGTCCACGCACCATGTTT
genomic: TAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAAgtaagaactt ... ttaactgcagAACAAGGATGGTGGGTGGGGTTTGCATATTGAAGGTCCAAGCACCATGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAATTACTCTGTCTATCACTGGGGCGTTGAATACAGTCTTAACTGAAGAACATAGAAAGGAAATATGCCGTTACCTCTATAATCATCAAgtaagaacttcatgccattttgctccttaatctatgggcttctcctagtagtcctcctaattagttaaatttaactgcag

- - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA