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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' |
CCATTAATTCAACATATATGTCTACAAAGCTGGAGTAAGATCATAACCATTTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatcaagagttcttttttttcagtgatttcacagtccctagattttgttgaagtgggtttcttgatcttgaggtatatacaaacatccaagttggtccaacatatttgtctggtactgctactgttgccag
species | Glycine max |
transcript | GLYMA06G07850.1 |
intron # | 38 |
splice site | 5' |
intron type | U2 |
EST: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGGEST: gi|151412851|gb|EV282663.1|EV282663
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGGEST: gi|208333696|gb|GE131123.1|GE131123
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: GAAGTGGAAAGAACCAAAAGCAATGGGGAANCAAGTATTAATT GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGGEST: gi|15814728|gb|BI787003.1|BI787003
genomic: GAAGTGGAAAGAACC-AAAGCAAT-GGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGGEST: gi|13240266|gb|BG359575.1|BG359575
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGGEST: gi|26056164|gb|CA799078.1|CA799078
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGGEST: gi|51338571|gb|CO982437.1|CO982437
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTAATTCAACATATATGTCTACAAAGCTGGAGTAAGATCATAACCATTTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatcaagagttcttttttttcagtgatttcacagtccctagattttgttgaagtgggtttcttgatcttgaggtatatacaaacatccaagttggtccaacatatttgtctggtactgctactgttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA