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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCAATTGATCTATGAATTCAATCTTCCTGgtaacattgattttcctctttacaatctggttttgttgtcttgtgtttttagctccacaaagtgttgtcggcatacttagctagtttttttgtattgtatcatgcag

Basic information

species Glycine max
transcript GLYMA06G07850.2
intron # 34
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07850.2 (Glycine max), 5'ss of exon 34
lower sequence: Vv04s0008g04520.t01 (Vitis vinifera), 5'ss of exon 35
ACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCAATTGATCTATGAATTCAATCTTCCTGgtaac-at-------tgattttcctctttacaatctggttttgttgtcttgtgtttttagctccac---aaagtgttgtcggcatacttagctagtttttttgtattgtatcatgcag
  |||| ||| | |||||||||  ||| || |||||||||||||||||||| |||| | |||| |||||||||||||||||||||| | ||       ||| |||| | |||  | | |  |||  ||    ||     |||| |  ||          | |     | | |  || |||||||| | || |  ||     
GAGAAGATGTGAGATTGCAGAGACTCTAGTGGAGAAGAATTTTGATTTGGCTTTCCGACTGATATATGAATTCAATCTTCCTGgtagccatagcattgtgaatttcttgtttgaagtatcatttgtttaatgtggtacattaggtttactttggtacaatataatttttcctttcttgttttttttttttttggcag----

upper sequence: GLYMA06G07850.2 (Glycine max), 5'ss of exon 34
lower sequence: PP1S109_57V6.1 (Physcomitrella patens), 5'ss of exon 35
ACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCAATTGATCTATGAATTCAATCTTCCTGgtaacattgattttcctctttacaatctggttttgttgtcttgtgtttttagct-ccacaaagtgttgtcggcatacttagctagtttttttgtattgtatcatgcag
 || || ||| || |||| |||   ||||| || ||||||||||||||||| |||||| | || |||||||| || ||| |||||| ||   |           | | ||  ||||| ||   ||   |     |||    | ||  | |||      |    | | || || | ||  | |    ||   
GCGGAGATGTGAAGTTGCTGAGAAGCTTGTGGAAAAGAATTTTGATTTGGCGTTCCAAATCATATATGAATTTAACCTTACTGgta-cagaaacgacg------atattcaagttttattacatttgatggccggctgtttcgaacagatgttttagaatcgtgtttgtcttgtagtcatatccattgtt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193431611|gb|FK397441.1|FK397441
EST:     GAAGAATTTTGATTTGGCATTCCAATTGATCTATGAATTCAATCTTCCTG                         CTGTTGATATATATGCCGGTGTTGCTGCATCTCTTGCTGAGAGAAAAAGAG
genomic: GAAGAATTTTGATTTGGCATTCCAATTGATCTATGAATTCAATCTTCCTGgtaacattga ... tatcatgcagCTGTTGATATATATGCCGGTGTTGCTGCATCTCTTGCTGAGAGAAAAAGAG