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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGAACTGAAGAAATGGGTTAATGTGAAGTCAACTAAATATGGGATCCTTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgttttacaagtcttgcactggttgctgcatgtaactcatctatttatttattactaatttactaataaaatatcatatgacactggagtctac...

Basic information

species Glycine max
transcript GLYMA16G30190.1
intron # 33
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33387319|gb|CA850526.1|CA850526
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|120494198|gb|EH222365.1|EH222365
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|120496018|gb|EH224185.1|EH224185
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|31310948|gb|CD396151.1|CD396151
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|120534429|gb|EH262562.1|EH262562
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|23731056|gb|BU763637.1|BU763637
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|23735388|gb|BU765973.1|BU765973
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|120493843|gb|EH222010.1|EH222010
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|20811332|gb|BQ295810.1|BQ295810
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|254334422|gb|GR844207.1|GR844207
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|120534316|gb|EH262449.1|EH262449
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTT
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|13790982|gb|BG653573.1|BG653573
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|120494341|gb|EH222508.1|EH222508
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|120534401|gb|EH262534.1|EH262534
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTT
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|120495983|gb|EH224150.1|EH224150
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|23730395|gb|BU763289.1|BU763289
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|37997604|gb|CF809193.1|CF809193
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
EST: gi|17402143|gb|BM178925.1|BM178925
EST:     TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAG                         GTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC
genomic: TTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgtt ... cttgattcagGTACTGTGTGACATAATTCAAGATGACGCAGAGCCTGCCAAGAAGAAATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAAGAACTGAAGAAATGGGTTAATGTGAAGTCAACTAAATATGGGATCCTTTTAGTAACTCGTGAGAGGCGAGCTCAAAGGCTTGGGACTGCGTTGAAGgtattttgttttacaagtcttgcactggttgctgcatgtaactcatctatttatttattactaatttactaataaaatatcatatgacactggagtctac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG