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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagcttttattttaatttttttctgatcaggctctttaaagcaattattgtacattttcatcaattgtttataaagttaaatgattatgcactgac...

Basic information

species Glycine max
transcript GLYMA16G30190.2
intron # 32
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22521685|gb|BU080496.1|BU080496
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|37997604|gb|CF809193.1|CF809193
EST:     AGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: AGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|7639380|gb|AW733704.1|AW733704
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|254334422|gb|GR844207.1|GR844207
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|13480151|gb|BG509494.1|BG509494
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|9984540|gb|BE658648.1|BE658648
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTNNCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|17963909|gb|BM270652.1|BM270652
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|18720655|gb|BM523266.1|BM523266
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|15662580|gb|BI699959.1|BI699959
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|14999959|gb|BI320773.1|BI320773
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|31461631|gb|CD403659.1|CD403659
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC