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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatcttgtcttcaatactagtacttatttccattgcccattctgaaatggttactaaagaaacagaagatatgcaggaatcctgtatgttacta...

Basic information

species Glycine max
transcript GLYMA16G30190.2
intron # 31
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22521685|gb|BU080496.1|BU080496
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
EST: gi|20813165|gb|BQ297643.1|BQ297643
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAGAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
EST: gi|9204949|gb|BE331173.1|BE331173
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAAAGATGGAGTTAACCCGAGA
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGA
EST: gi|13480151|gb|BG509494.1|BG509494
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
EST: gi|9984540|gb|BE658648.1|BE658648
EST:     TAGCAAAATTTTTTGNNNNAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGNNNAAGATGGAGTTAACCCGAGACCAATTGNCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
EST: gi|18720655|gb|BM523266.1|BM523266
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
EST: gi|15662580|gb|BI699959.1|BI699959
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
EST: gi|7146673|gb|AW508595.1|AW508595
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
EST: gi|14999959|gb|BI320773.1|BI320773
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
EST: gi|19348791|gb|BM893323.1|BM893323
EST:     TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG                         AATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG
genomic: TAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatc ... ctcactgtagAATATCAGGAAAAAGATGGAGTTAACCCGAGACCAATTGGCAGATGCACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAGgtactcaatcttgtcttcaatactagtacttatttccattgcccattctgaaatggttactaaagaaacagaagatatgcaggaatcctgtatgttacta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaga