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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTATAATGGACATTTTGCTGTCTTTGTTGGAGTTTGCTGCTTCATATAACTCATCCACCAATCTTAGAACTCGTATGCACCAAATTCCTGATGAAAGgtaagacaatactcagtatctaattgtcttaattttgttctgttggaatttctttacaattggaatgtaggactttaaggttcactaaactattcttggacag

Basic information

species Glycine max
transcript GLYMA13G17610.1
intron # 31
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 31
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 31
TTTCTATAATGGACATTTTGCTGTCTTTGTTGGAGTTTGCTGCTTCATATAACTCATCCACCAATCTTAGAACTCGTATGCACCAAATTCCTGATGAAAGgtaagacaatactc----agtatctaattgtcttaattttgttctg------------ttggaatttctttacaattggaatgtaggactttaaggttca---ctaaactattcttggacag
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TTACCATGATGGAAATCTTATTAGCTGTGTTGGAGTTTGCTGCTTCATATAATTCATATACTAACCTAAGAATGCGCATGCACCATATTCCTGCTGAGAGgtagtgtatttcttttcaatttttttgtttttttgttttttttttagtaagttttgcatttgaatcttttcccccttgtaaccttgaactgcaagactgatagccatttcatgattggatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185279|gb|HO030492.1|HO030492
EST:     AACTCATCCACTAATCTTAGAACTCGTATGCACCAAATTCCTGATGAAAG                         GCCACCAATAAATCTTCTTCGCCAGGAATTAGCTGGTACTGGCATATATCT
genomic: AACTCATCCACCAATCTTAGAACTCGTATGCACCAAATTCCTGATGAAAGgtaagacaat ... tcttggacagGCCACCAATAAATCTTCTTCGCCAGGAATTAGCTGGTACTGGCATATATCT