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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCAACAGTGAGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcactcaactgcattagcatttgataatggtagttcttggagtatcgatgaatcatacattcacgctcttggtcataatccagagttgaagact...

Basic information

species Glycine max
transcript GLYMA07G00630.2
intron # 31
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996275|gb|BM085647.1|BM085647
EST:     AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: gi|214006313|gb|DB990236.1|DB990236
EST:     GACTTGATTGGAAGCTATGGCTTGC-TATGCTTGGTATTGGCCTTTTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: GACTTGATTGGAAGCTATGGCTTGCTTCT-CTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: gi|208232958|gb|GE035427.1|GE035427
EST:     AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: gi|31312382|gb|CD397585.1|CD397585
EST:     AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: gi|10236770|gb|BE805658.1|BE805658
EST:     AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: gi|151393639|gb|EV263514.1|EV263514
EST:     AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: gi|213594551|gb|DB975425.1|DB975425
EST:     AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: gi|31468220|gb|CD410248.1|CD410248
EST:     GGCTTGCTTCTCTTGGTATTGGCCTTGTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: GGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: gi|13791738|gb|BG654329.1|BG654329
EST:     AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATAGGCCTTGTCAG                         CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCAACAGTGAGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcactcaactgcattagcatttgataatggtagttcttggagtatcgatgaatcatacattcacgctcttggtcataatccagagttgaagact

- - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG