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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAATTTGCCTTTTTTTCATTAGGGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAGgtacattcatttatacttggattccttttttttttgtgataattcaattgatatttagcatcatttttatatgtctgaatttatgcttgcattgtatcttgtgatag

Basic information

species Glycine max
transcript GLYMA02G43930.1
intron # 30
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 30
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 30
TGGAAATTTGCCTTTTTTTCATTAGGGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAGgtacattcatttatacttggattccttttttttttgtgataa-ttcaattgatatttagcatcatttttatatgtctgaatttatgcttgcattgtatcttgtgatag
||||  ||||||||| ||||| |||| || || || |||||||| || ||||||||||| |||||||||||||||||    |  | | |   || ||    |  | ||  |   |   ||  |||  ||||||   | |||||||| | | ||||  |   ||||||                
TGGAGGTTTGCCTTTCTTTCACTAGGTCGCCCAGAGTACCTTCAAGACTCTGACATTGTCTCCAGTCGTTTTCAGgtgtggt-gtgtttgtgtgtatgaaatcatattgggcatttgcttttatt--tatttatttttatttttatttttttgaacattcacttgcaaacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193542686|gb|FK501067.1|FK501067
EST:     CGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAG                         AGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
genomic: CGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAGgtacattcat ... cttgtgatagAGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
EST: gi|11687460|gb|BF595136.1|BF595136
EST:     GGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAG                         AGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
genomic: GGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAGgtacattcat ... cttgtgatagAGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
EST: gi|19052805|gb|BM731480.1|BM731480
EST:     GTCGTTTTCAG                         AGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
genomic: GTCGTTTTCAGgtacattcat ... cttgtgatagAGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
EST: gi|10231860|gb|BE800748.1|BE800748
EST:     GGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAG                         AGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
genomic: GGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAGgtacattcat ... cttgtgatagAGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
EST: gi|37996873|gb|CF808462.1|CF808462
EST:     GGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAG                         AGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT
genomic: GGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAGgtacattcat ... cttgtgatagAGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACT