Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactccatgaacttgttgaaaattaacaatttataaattataatagtgaagccttaatgctttggtgttatgaattaactaaatatttatttgatttttcag

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 30
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 30
lower sequence: GRMZM2G149802_T02 (Zea mays), 5'ss of exon 29
GCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcca-tgaacttgttgaaaattaacaatttataaattataatagtgaagccttaatgctttggtgttatgaattaactaaatatttatttgatttttcag
  |  | || |  ||  | | |||| |  |  | || |||||||||||||||||||| ||||| || || || |||||||| || || ||||| ||| ||||||  |  || |   ||       |  | |||||||    |||     |  |  ||   ||     ||||||      | | |||||  |||  |   |||  |||
ATACTCGACTCACAGCGTAAACCTTAGAGTTATGGGGGATTCTGAGAGAGGAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggcagttcgctccgcctgagcttacaatttgcccatttggggaaagtggc---aac----tggtgtc-----taatctaaaccttt--tgcgtttaacag

upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 30
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 28
GCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgt-ttcactccatgaacttgttgaaaatt--aacaatttataaat-tataatagtgaagccttaatgctt-tggtgttatgaatta---actaaatatttatttga----tttttcag-----------
||| || ||    ||| ||| ||| ||| || |||| ||||| ||||||||||| |||||||| || || |||||||| ||||| || || || |||||||| ||||    ||  | |   | |   ||  | |||| |||     | |  || |    | |||||   | |||  |  |  ||||   ||||||  |   | |||    |  ||  |           
GCACACCACAAATAGTCTCAACCTGCGGGTGATTGGGGATTCCGAGAGAGGAACGGTTTGTCCTAACTACCCTCGCTGTAATGGCCGGCTTGTAAGAAAGgtattcatcaaatctaataactcactcttttatcaatatatttgccttttctatttcccctttaatttctatggcatctttcattatttactaaacttgggtgtgaaatgtacttgggactgggactag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193709895|gb|FK642145.1|FK642145
EST:     GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAG                         TACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
genomic: GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcc ... gatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
EST: gi|193677647|gb|FK614905.1|FK614905
EST:     GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAG                         TACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
genomic: GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcc ... gatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
EST: gi|207800080|gb|GD768337.1|GD768337
EST:     GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAG                         TACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
genomic: GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcc ... gatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
EST: gi|19269740|gb|BM885996.1|BM885996
EST:     GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAG                         TACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
genomic: GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcc ... gatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC