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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATACCGCAAGATATGGGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtacattcagagttttctttgtatccctattggagttctccacgtgcacttttcctgatcttttaattttgcctgcag

Basic information

species Glycine max
transcript GLYMA20G38270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38270.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G09160.2 (Arabidopsis thaliana), 5'ss of exon 3
GCAATACCGCAAGATATGGGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtac------attcagagtttt------ctttgta-tccctattggagttctccacgtgcacttttcctgatctt-ttaattttgcctgcag
||||| || ||||      | ||||||||||||||||||||||| ||| | ||| |||||| ||| ||||| ||||||||||| || |||||| | ||||||        || |  | ||||      |||| |  |  |||||   ||| | || |    || |  | |||    |   || ||| | |||
GCAATTCCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGCTTTGTGAAAACTGACATTGAATTTCAGCAGAAAGgtcttagcttatgcttattttttaaaggctttttgctttctattcttgtttttcaagcatgctctaaccgataagatctgttgtgcttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209702216|gb|BW677965.1|BW677965
EST:     TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAG                         GGGAAACTTCTGGAACAACAGCTACATTTGTTCTGATTGATAGATGGACTG
genomic: TGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtacattcag ... ttgcctgcagGGGAAACTTCTGGAACAACAGCTACATTTGTTCTGATTGATAGATGGACTG