1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGgcacgtactagtttctcaaccttgtactgcagtgcagagcattaatttgtatcttggcatgcattctttatttaaacattcaccaatcatcataacagagttttttccccctgtttttctag
species | Glycine max |
transcript | GLYMA20G36140.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAG TACTATCTGAAGACAGGAACGTGCAAATTTGGAGCCACATGCAAATTTCATEST: gi|8283911|gb|BE021470.1|BE021470
genomic: CAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGgcacgtacta ... gtttttctagTACTATCTGAAGACAGGAACGTGCAAATTTGGAGCCACATGCAAATTTCAT
EST: GCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAG TACTATCTGAAGACAGGAACGTGCAAATTTGGAGCCACATGCAAATTTCATEST: gi|298164490|gb|HO014135.1|HO014135
genomic: GCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGgcacgtacta ... gtttttctagTACTATCTGAAGACAGGAACGTGCAAATTTGGAGCCACATGCAAATTTCAT
EST: CAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAG TACTATCTGAAGACAGGAACGTGCAAATTTGGAGCCACATGCAAATTTCAT
genomic: CAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGgcacgtacta ... gtttttctagTACTATCTGAAGACAGGAACGTGCAAATTTGGAGCCACATGCAAATTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGgcacgtactagtttctcaaccttgtactgcagtgcagagcattaatttgtatcttggcatgcattctttatttaaacattcaccaatcatcataacagagttttttccccctgtttttctag
- - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - AAAGAA