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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCACCTCAATCTCTATATGGCCTTTCTCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgtctcaccacatatatccttgctactatctaactggttgtgatgttataaaatcaaagttgcctatctataatctaattattgattgtggagttgattttgcaaagcacccaaattttatcacagcatatttgactgttcaaaagtgctcttaattttaatcattgtgacag

Basic information

species Glycine max
transcript GLYMA20G26950.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G26950.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G49970.1 (Arabidopsis thaliana), 5'ss of exon 2
GAATGCACCTCAATCTCTATATGGCCTTTCTCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgtctcaccacatatatccttgctactatctaactggttgtgatgttataaaatcaaagt-tgcctatctataatctaattattgattgtggagttgattttgcaaagcacccaaattttatcacagcatatttgactgttcaaaagtgctcttaattttaatcattgtgacag
||| | ||| |||| | | || || |||  | |  | |||||||| |||||||||||||||||||  ||| |||||  |||| | |||| ||||||||||||         | | ||  | |||    ||   |   ||||   ||| |    || | | ||   |    |||    |  |   |||   |  |   |  |  |     |  |  |  | |    ||||  ||   ||||||                               
GAACGTACCACAATATTTTTACGGGCTTAATTCAGCTCAAATGGATATGTTCATGACAGAAGATAGCCCTGTCCGTAGGCAAGCGGAAAAAGTTACAGAGgtta------gtttttctcttctaa-gccttcttatctgtgcatttacaggtccagaatctggaaacagctaagaggagaacaaattt--gcttctctactatatgattcttatctcgtcttttggcatgcttctttgttcag------------------------------

upper sequence: GLYMA20G26950.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0091g00700.t01 (Vitis vinifera), 5'ss of exon 2
GAATGCACCTCAATCTCTATATGGCCTTTCTCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgtctcaccacatatatccttgctactatctaactggttgtgatgttataaaatcaaagttgcctatctataatctaattattgattgtggagttgattttgcaaagcacccaaattttatcacagcatatttgactgttcaaaagtgctcttaattttaatcattgtgacag
 ||||  || || | | | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||  | | ||| || |||||||||||||||||  ||   | |  |  ||  ||| | || | ||   |||      ||  ||      | |  | |||| ||           ||     | |    || | |   ||                                                                
AAATGTTCCCCAGTATTTTTATGGCCTTTCACCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgt--catttcttcaaaactccctaatctc-agctcactgta----catccaagtggcttcgatt-tctaaaagaagccccagaataactaaatcatcttagtagtcca----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193699437|gb|FK639836.1|FK639836
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATTTCATCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgtctcaccac ... attgtgacagGAAAGCATTTCATCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT